1 to 10 of 13 Results
Jun 18, 2026
Garcia Milian, Rolando, 2026, "Data for EnrichViz: An Interactive R Shiny Application for Visualization of Pathway and Functional Enrichment Results from Omics Data", https://doi.org/10.60600/YU/F4MKC3, Yale Dataverse, V2, UNF:6:f7Eul34oJD1wlc0rnIrIvg== [fileUNF]
Pathway and functional enrichment analysis is a cornerstone of omics data interpretation, enabling researchers to map differentially expressed proteins or genes onto curated biological processes, signaling cascades, and molecular functions. While tools such as Ingenuity Pathway Analysis (IPA), g:Profiler, and Enrichr are widely used to generate ran... |
Jun 18, 2026 -
Data for EnrichViz: An Interactive R Shiny Application for Visualization of Pathway and Functional Enrichment Results from Omics Data
Tabular Data - 85.2 KB - 10 Variables, 244 Observations - UNF:6:1uu7k9Vm0aeyRkA4fr2WrA==
g:ProfilerGOst enrichment analysis of DEGs comparing Neuronal Progenitor Cells, derived from discordant monozygotic twins with Parkinson’s Disease vs healthy controls. Parameters: version e114_eg62_p19_27110d83, organism hsapiens, source KEGG, REAC, WP, significance threshold method g_SCS, user threshold 0.01 |
Jun 18, 2026 -
Data for EnrichViz: An Interactive R Shiny Application for Visualization of Pathway and Functional Enrichment Results from Omics Data
Tabular Data - 1.6 KB - 6 Variables, 12 Observations - UNF:6:fq9jc+qT19XG8WW/j4uLOQ==
GSE185009 metadata was downloaded from GEO Datasets and filtered for Progenitor Cells from Parkinson Disease and Healthy Controls |
Jun 18, 2026 -
Data for EnrichViz: An Interactive R Shiny Application for Visualization of Pathway and Functional Enrichment Results from Omics Data
Tabular Data - 3.3 MB - 14 Variables, 35413 Observations - UNF:6:nQE/3IIopcFH7/jjCc5YNw==
GSE185009 normalized RNA-seq counts downloaded from GREIN database only samples from Progenitor Cells from Parkinson Disease and Healthy Controls were included. |
Jun 18, 2026 -
Data for EnrichViz: An Interactive R Shiny Application for Visualization of Pathway and Functional Enrichment Results from Omics Data
Tabular Data - 228.9 KB - 5 Variables, 3805 Observations - UNF:6:U8bCpUV1I0d7aMg2JUOobQ==
GSE185009 Differentially expressed genes comparing Neuronal Progenitor Cells derived from discordant monozygotic twins with Parkinson’s Disease vs healthy controls. Differential DESeq2 analysis was done using the NCBI GEO2R platform, p-adjusted 0.05 |
Jun 17, 2026 -
Data for EnrichViz: An Interactive R Shiny Application for Visualization of Pathway and Functional Enrichment Results from Omics Data
Tabular Data - 121.4 KB - 7 Variables, 869 Observations - UNF:6:3zAsRhXg09Zq955NZi4FyA==
Results of the enrichment analysis from Ingenuity Pathway Analysis of the differentialy abundant metabolites comparing liver of mice Old vs Young- 46 differentially abundant metabolites. Dataset downloaded from: Houtkooper RH, Argmann C, Houten SM, Cantó C, Jeninga EH, Andreux PA, Thomas C, Doenlen R, Schoonjans K, Auwerx J. The metabolic footprint... |
Jun 17, 2026 -
Data for EnrichViz: An Interactive R Shiny Application for Visualization of Pathway and Functional Enrichment Results from Omics Data
Tabular Data - 60.2 KB - 15 Variables, 281 Observations - UNF:6:QrtSe///qY9n1AThZjSxFQ==
Results of the differential analysis (t-test) comparing Old vs Young mice liver metabolites |
Jun 17, 2026 -
Data for EnrichViz: An Interactive R Shiny Application for Visualization of Pathway and Functional Enrichment Results from Omics Data
Tabular Data - 91.3 KB - 20 Variables, 281 Observations - UNF:6:QKEyu2AckBf0VJ+T6wsmag==
Log-transformed liver metabolomics data |
Jun 17, 2026 -
Data for EnrichViz: An Interactive R Shiny Application for Visualization of Pathway and Functional Enrichment Results from Omics Data
Tabular Data - 242 B - 2 Variables, 15 Observations - UNF:6:Nn+T6xaoFcj1+4DVlSotew==
Metadata of samples used in the metabolomics differential analysis |
Jun 17, 2026 -
Data for EnrichViz: An Interactive R Shiny Application for Visualization of Pathway and Functional Enrichment Results from Omics Data
Tabular Data - 258 B - 2 Variables, 6 Observations - UNF:6:L3i+tvRx1+9E5ThTuijNcg==
metadata for samples used in the proteomics visualization example. Data from this manuscript: Sharma A, Atasi T, Collin F, Wang W, Lam TT, Garcia-Milian R, Arroum T, Pham L, Hüttemann M, Moszczynska A. The Proteomic Landscape of Parkin-Deficient and Parkin-Overexpressing Rat Nucleus Accumbens: An Insight into the Role of Parkin in Methamphetamine U... |
